milvus/internal/util/importutil/numpy_parser_test.go

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// Licensed to the LF AI & Data foundation under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package importutil
import (
"context"
"math"
"os"
"path"
"testing"
"github.com/cockroachdb/errors"
"github.com/stretchr/testify/assert"
"github.com/milvus-io/milvus-proto/go-api/v2/commonpb"
"github.com/milvus-io/milvus-proto/go-api/v2/schemapb"
"github.com/milvus-io/milvus/internal/storage"
"github.com/milvus-io/milvus/pkg/common"
"github.com/milvus-io/milvus/pkg/util/timerecord"
)
func createLocalChunkManager(t *testing.T) storage.ChunkManager {
ctx := context.Background()
// NewDefaultFactory() use "/tmp/milvus" as default root path, and cannot specify root path
// NewChunkManagerFactory() can specify the root path
f := storage.NewChunkManagerFactory("local", storage.RootPath(TempFilesPath))
cm, err := f.NewPersistentStorageChunkManager(ctx)
assert.NoError(t, err)
return cm
}
func createNumpyParser(t *testing.T) *NumpyParser {
ctx := context.Background()
schema := sampleSchema()
idAllocator := newIDAllocator(ctx, t, nil)
cm := createLocalChunkManager(t)
flushFunc := func(fields BlockData, shardID int, partID int64) error {
return nil
}
collectionInfo, err := NewCollectionInfo(schema, 2, []int64{1})
assert.NoError(t, err)
parser, err := NewNumpyParser(ctx, collectionInfo, idAllocator, 100, cm, flushFunc, nil)
assert.NoError(t, err)
assert.NotNil(t, parser)
return parser
}
func findSchema(schema *schemapb.CollectionSchema, dt schemapb.DataType) *schemapb.FieldSchema {
fields := schema.Fields
for _, field := range fields {
if field.GetDataType() == dt {
return field
}
}
return nil
}
func createSampleNumpyFiles(t *testing.T, cm storage.ChunkManager) []string {
ctx := context.Background()
files := make([]string, 0)
filePath := path.Join(cm.RootPath(), "FieldBool.npy")
content, err := CreateNumpyData([]bool{true, false, true, true, true})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldInt8.npy")
content, err = CreateNumpyData([]int8{10, 11, 12, 13, 14})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldInt16.npy")
content, err = CreateNumpyData([]int16{100, 101, 102, 103, 104})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldInt32.npy")
content, err = CreateNumpyData([]int32{1000, 1001, 1002, 1003, 1004})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldInt64.npy")
content, err = CreateNumpyData([]int64{10000, 10001, 10002, 10003, 10004})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldFloat.npy")
content, err = CreateNumpyData([]float32{3.14, 3.15, 3.16, 3.17, 3.18})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldDouble.npy")
content, err = CreateNumpyData([]float64{5.1, 5.2, 5.3, 5.4, 5.5})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldString.npy")
content, err = CreateNumpyData([]string{"a", "bb", "ccc", "dd", "e"})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldJSON.npy")
content, err = CreateNumpyData([]string{"{\"x\": 10, \"y\": 5}", "{\"z\": 5}", "{}", "{}", "{\"x\": 3}"})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldBinaryVector.npy")
content, err = CreateNumpyData([][2]uint8{{1, 2}, {3, 4}, {5, 6}, {7, 8}, {9, 10}})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
filePath = path.Join(cm.RootPath(), "FieldFloatVector.npy")
content, err = CreateNumpyData([][4]float32{{1, 2, 3, 4}, {3, 4, 5, 6}, {5, 6, 7, 8}, {7, 8, 9, 10}, {9, 10, 11, 12}})
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
files = append(files, filePath)
return files
}
func Test_NewNumpyParser(t *testing.T) {
ctx := context.Background()
parser, err := NewNumpyParser(ctx, nil, nil, 100, nil, nil, nil)
assert.Error(t, err)
assert.Nil(t, parser)
collectionInfo, err := NewCollectionInfo(sampleSchema(), 2, []int64{1})
assert.NoError(t, err)
parser, err = NewNumpyParser(ctx, collectionInfo, nil, 100, nil, nil, nil)
assert.Error(t, err)
assert.Nil(t, parser)
idAllocator := newIDAllocator(ctx, t, nil)
parser, err = NewNumpyParser(ctx, collectionInfo, idAllocator, 100, nil, nil, nil)
assert.Error(t, err)
assert.Nil(t, parser)
cm := createLocalChunkManager(t)
parser, err = NewNumpyParser(ctx, collectionInfo, idAllocator, 100, cm, nil, nil)
assert.Error(t, err)
assert.Nil(t, parser)
flushFunc := func(fields BlockData, shardID int, partID int64) error {
return nil
}
parser, err = NewNumpyParser(ctx, collectionInfo, idAllocator, 100, cm, flushFunc, nil)
assert.NoError(t, err)
assert.NotNil(t, parser)
}
func Test_NumpyParserValidateFileNames(t *testing.T) {
parser := createNumpyParser(t)
// file has no corresponding field in collection
err := parser.validateFileNames([]string{"dummy.npy"})
assert.Error(t, err)
// there is no file corresponding to field
fileNames := []string{
"FieldBool.npy",
"FieldInt8.npy",
"FieldInt16.npy",
"FieldInt32.npy",
"FieldInt64.npy",
"FieldFloat.npy",
"FieldDouble.npy",
"FieldString.npy",
"FieldJSON.npy",
"FieldBinaryVector.npy",
}
err = parser.validateFileNames(fileNames)
assert.Error(t, err)
// valid
fileNames = append(fileNames, "FieldFloatVector.npy")
err = parser.validateFileNames(fileNames)
assert.NoError(t, err)
// has dynamic field
schema := &schemapb.CollectionSchema{
Name: "schema",
Description: "schema",
AutoID: true,
EnableDynamicField: true,
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: false,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 102,
Name: "FieldDynamic",
IsDynamic: true,
DataType: schemapb.DataType_JSON,
},
},
}
parser.collectionInfo.resetSchema(schema)
fileNames = []string{"FieldInt64.npy"}
err = parser.validateFileNames(fileNames)
assert.NoError(t, err)
fileNames = append(fileNames, "FieldDynamic.npy")
err = parser.validateFileNames(fileNames)
assert.NoError(t, err)
}
func Test_NumpyParserValidateHeader(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
parser := createNumpyParser(t)
// nil input error
err = parser.validateHeader(nil)
assert.Error(t, err)
t.Run("not a valid numpy array", func(t *testing.T) {
filePath := TempFilesPath + "invalid.npy"
err = CreateNumpyFile(filePath, "aaa")
assert.NoError(t, err)
file, err := os.Open(filePath)
assert.NoError(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.NoError(t, err)
columnReader := &NumpyColumnReader{
fieldName: "invalid",
reader: adapter,
}
err = parser.validateHeader(columnReader)
assert.Error(t, err)
})
validateHeader := func(data interface{}, fieldSchema *schemapb.FieldSchema) error {
filePath := TempFilesPath + fieldSchema.GetName() + ".npy"
err = CreateNumpyFile(filePath, data)
assert.NoError(t, err)
file, err := os.Open(filePath)
assert.NoError(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.NoError(t, err)
dim, _ := getFieldDimension(fieldSchema)
columnReader := &NumpyColumnReader{
fieldName: fieldSchema.GetName(),
fieldID: fieldSchema.GetFieldID(),
dataType: fieldSchema.GetDataType(),
dimension: dim,
file: file,
reader: adapter,
}
err = parser.validateHeader(columnReader)
return err
}
t.Run("veridate float vector numpy", func(t *testing.T) {
// numpy file is not vectors
data1 := []int32{1, 2, 3, 4}
schema := findSchema(sampleSchema(), schemapb.DataType_FloatVector)
err = validateHeader(data1, schema)
assert.Error(t, err)
// field data type is not float vector type
data2 := []float32{1.1, 2.1, 3.1, 4.1}
err = validateHeader(data2, schema)
assert.Error(t, err)
// dimension mismatch
data3 := [][4]float32{{1.1, 2.1, 3.1, 4.1}, {5.2, 6.2, 7.2, 8.2}}
schema = &schemapb.FieldSchema{
FieldID: 111,
Name: "FieldFloatVector",
IsPrimaryKey: false,
Description: "float_vector",
DataType: schemapb.DataType_FloatVector,
TypeParams: []*commonpb.KeyValuePair{
{Key: common.DimKey, Value: "99"},
},
}
err = validateHeader(data3, schema)
assert.Error(t, err)
})
t.Run("veridate binary vector numpy", func(t *testing.T) {
// numpy file is not vectors
data1 := []int32{1, 2, 3, 4}
schema := findSchema(sampleSchema(), schemapb.DataType_BinaryVector)
err = validateHeader(data1, schema)
assert.Error(t, err)
// field data type is not binary vector type
data2 := []uint8{1, 2, 3, 4, 5, 6}
err = validateHeader(data2, schema)
assert.Error(t, err)
// dimension mismatch
data3 := [][2]uint8{{1, 2}, {3, 4}, {5, 6}}
schema = &schemapb.FieldSchema{
FieldID: 110,
Name: "FieldBinaryVector",
IsPrimaryKey: false,
Description: "binary_vector",
DataType: schemapb.DataType_BinaryVector,
TypeParams: []*commonpb.KeyValuePair{
{Key: common.DimKey, Value: "99"},
},
}
err = validateHeader(data3, schema)
assert.Error(t, err)
})
t.Run("veridate scalar numpy", func(t *testing.T) {
// data type mismatch
data1 := []int32{1, 2, 3, 4}
schema := findSchema(sampleSchema(), schemapb.DataType_Int8)
err = validateHeader(data1, schema)
assert.Error(t, err)
// illegal shape
data2 := [][2]int8{{1, 2}, {3, 4}, {5, 6}}
err = validateHeader(data2, schema)
assert.Error(t, err)
})
}
func Test_NumpyParserCreateReaders(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
parser := createNumpyParser(t)
// no field match the filename
t.Run("no field match the filename", func(t *testing.T) {
filePath := TempFilesPath + "dummy.npy"
files := []string{filePath}
readers, err := parser.createReaders(files)
assert.Error(t, err)
assert.Empty(t, readers)
defer closeReaders(readers)
})
// file doesn't exist
t.Run("file doesnt exist", func(t *testing.T) {
filePath := TempFilesPath + "FieldBool.npy"
files := []string{filePath}
readers, err := parser.createReaders(files)
assert.Error(t, err)
assert.Empty(t, readers)
defer closeReaders(readers)
})
// not a numpy file
t.Run("not a numpy file", func(t *testing.T) {
ctx := context.Background()
filePath := TempFilesPath + "FieldBool.npy"
files := []string{filePath}
err = cm.Write(ctx, filePath, []byte{1, 2, 3})
readers, err := parser.createReaders(files)
assert.Error(t, err)
assert.Empty(t, readers)
defer closeReaders(readers)
})
t.Run("succeed", func(t *testing.T) {
files := createSampleNumpyFiles(t, cm)
readers, err := parser.createReaders(files)
assert.NoError(t, err)
assert.Equal(t, len(files), len(readers))
for i := 0; i < len(readers); i++ {
reader := readers[i]
schema := findSchema(sampleSchema(), reader.dataType)
assert.NotNil(t, schema)
assert.Equal(t, schema.GetName(), reader.fieldName)
assert.Equal(t, schema.GetFieldID(), reader.fieldID)
dim, _ := getFieldDimension(schema)
assert.Equal(t, dim, reader.dimension)
}
defer closeReaders(readers)
})
t.Run("row count doesnt equal", func(t *testing.T) {
files := createSampleNumpyFiles(t, cm)
filePath := TempFilesPath + "FieldBool.npy"
err = CreateNumpyFile(filePath, []bool{true})
assert.NoError(t, err)
readers, err := parser.createReaders(files)
assert.Error(t, err)
assert.Empty(t, readers)
defer closeReaders(readers)
})
t.Run("velidate header failed", func(t *testing.T) {
filePath := TempFilesPath + "FieldBool.npy"
err = CreateNumpyFile(filePath, []int32{1, 2, 3, 4, 5})
assert.NoError(t, err)
files := []string{filePath}
readers, err := parser.createReaders(files)
assert.Error(t, err)
assert.Empty(t, readers)
closeReaders(readers)
})
}
func Test_NumpyParserReadData(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
parser := createNumpyParser(t)
t.Run("general cases", func(t *testing.T) {
files := createSampleNumpyFiles(t, cm)
readers, err := parser.createReaders(files)
assert.NoError(t, err)
assert.Equal(t, len(files), len(readers))
defer closeReaders(readers)
// each sample file has 5 rows, read the first 2 rows
for _, reader := range readers {
fieldData, err := parser.readData(reader, 2)
assert.NoError(t, err)
assert.Equal(t, 2, fieldData.RowNum())
}
// read the left rows
for _, reader := range readers {
fieldData, err := parser.readData(reader, 100)
assert.NoError(t, err)
assert.Equal(t, 3, fieldData.RowNum())
}
// unsupport data type
columnReader := &NumpyColumnReader{
fieldName: "dummy",
dataType: schemapb.DataType_None,
}
fieldData, err := parser.readData(columnReader, 2)
assert.Error(t, err)
assert.Nil(t, fieldData)
})
readEmptyFunc := func(filedName string, data interface{}) {
filePath := TempFilesPath + filedName + ".npy"
err = CreateNumpyFile(filePath, data)
assert.NoError(t, err)
readers, err := parser.createReaders([]string{filePath})
assert.NoError(t, err)
assert.Equal(t, 1, len(readers))
defer closeReaders(readers)
// row count 0 is not allowed
fieldData, err := parser.readData(readers[0], 0)
assert.Error(t, err)
assert.Nil(t, fieldData)
// nothint to read
_, err = parser.readData(readers[0], 2)
assert.NoError(t, err)
}
readBatchFunc := func(filedName string, data interface{}, dataLen int, getValue func(k int) interface{}) {
filePath := TempFilesPath + filedName + ".npy"
err = CreateNumpyFile(filePath, data)
assert.NoError(t, err)
readers, err := parser.createReaders([]string{filePath})
assert.NoError(t, err)
assert.Equal(t, 1, len(readers))
defer closeReaders(readers)
readPosition := 2
fieldData, err := parser.readData(readers[0], readPosition)
assert.NoError(t, err)
assert.Equal(t, readPosition, fieldData.RowNum())
for i := 0; i < readPosition; i++ {
assert.Equal(t, getValue(i), fieldData.GetRow(i))
}
if dataLen > readPosition {
fieldData, err = parser.readData(readers[0], dataLen+1)
assert.NoError(t, err)
assert.Equal(t, dataLen-readPosition, fieldData.RowNum())
for i := readPosition; i < dataLen; i++ {
assert.Equal(t, getValue(i), fieldData.GetRow(i-readPosition))
}
}
}
readErrorFunc := func(filedName string, data interface{}) {
filePath := TempFilesPath + filedName + ".npy"
err = CreateNumpyFile(filePath, data)
assert.NoError(t, err)
readers, err := parser.createReaders([]string{filePath})
assert.NoError(t, err)
assert.Equal(t, 1, len(readers))
defer closeReaders(readers)
// encounter error
fieldData, err := parser.readData(readers[0], 1000)
assert.Error(t, err)
assert.Nil(t, fieldData)
}
t.Run("read bool", func(t *testing.T) {
readEmptyFunc("FieldBool", []bool{})
data := []bool{true, false, true, false, false, true}
readBatchFunc("FieldBool", data, len(data), func(k int) interface{} { return data[k] })
})
t.Run("read int8", func(t *testing.T) {
readEmptyFunc("FieldInt8", []int8{})
data := []int8{1, 3, 5, 7, 9, 4, 2, 6, 8}
readBatchFunc("FieldInt8", data, len(data), func(k int) interface{} { return data[k] })
})
t.Run("read int16", func(t *testing.T) {
readEmptyFunc("FieldInt16", []int16{})
data := []int16{21, 13, 35, 47, 59, 34, 12}
readBatchFunc("FieldInt16", data, len(data), func(k int) interface{} { return data[k] })
})
t.Run("read int32", func(t *testing.T) {
readEmptyFunc("FieldInt32", []int32{})
data := []int32{1, 3, 5, 7, 9, 4, 2, 6, 8}
readBatchFunc("FieldInt32", data, len(data), func(k int) interface{} { return data[k] })
})
t.Run("read int64", func(t *testing.T) {
readEmptyFunc("FieldInt64", []int64{})
data := []int64{100, 200}
readBatchFunc("FieldInt64", data, len(data), func(k int) interface{} { return data[k] })
})
t.Run("read float", func(t *testing.T) {
readEmptyFunc("FieldFloat", []float32{})
data := []float32{2.5, 32.2, 53.254, 3.45, 65.23421, 54.8978}
readBatchFunc("FieldFloat", data, len(data), func(k int) interface{} { return data[k] })
data = []float32{2.5, 32.2, float32(math.NaN())}
readErrorFunc("FieldFloat", data)
})
t.Run("read double", func(t *testing.T) {
readEmptyFunc("FieldDouble", []float64{})
data := []float64{65.24454, 343.4365, 432.6556}
readBatchFunc("FieldDouble", data, len(data), func(k int) interface{} { return data[k] })
data = []float64{65.24454, math.Inf(1)}
readErrorFunc("FieldDouble", data)
})
specialReadEmptyFunc := func(filedName string, data interface{}) {
ctx := context.Background()
filePath := TempFilesPath + filedName + ".npy"
content, err := CreateNumpyData(data)
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
readers, err := parser.createReaders([]string{filePath})
assert.NoError(t, err)
assert.Equal(t, 1, len(readers))
defer closeReaders(readers)
// row count 0 is not allowed
fieldData, err := parser.readData(readers[0], 0)
assert.Error(t, err)
assert.Nil(t, fieldData)
}
t.Run("read varchar", func(t *testing.T) {
specialReadEmptyFunc("FieldString", []string{"aaa"})
})
t.Run("read JSON", func(t *testing.T) {
specialReadEmptyFunc("FieldJSON", []string{"{\"x\": 1}"})
})
t.Run("read binary vector", func(t *testing.T) {
specialReadEmptyFunc("FieldBinaryVector", [][2]uint8{{1, 2}, {3, 4}})
})
t.Run("read float vector", func(t *testing.T) {
specialReadEmptyFunc("FieldFloatVector", [][4]float32{{1, 2, 3, 4}, {3, 4, 5, 6}})
specialReadEmptyFunc("FieldFloatVector", [][4]float64{{1, 2, 3, 4}, {3, 4, 5, 6}})
readErrorFunc("FieldFloatVector", [][4]float32{{1, 2, 3, float32(math.NaN())}, {3, 4, 5, 6}})
readErrorFunc("FieldFloatVector", [][4]float64{{1, 2, 3, 4}, {3, 4, math.Inf(1), 6}})
})
}
func Test_NumpyParserPrepareAppendFunctions(t *testing.T) {
parser := createNumpyParser(t)
// succeed
appendFuncs, err := parser.prepareAppendFunctions()
assert.NoError(t, err)
assert.Equal(t, len(sampleSchema().Fields), len(appendFuncs))
// schema has unsupported data type
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "uid",
IsPrimaryKey: true,
AutoID: true,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 102,
Name: "flag",
IsPrimaryKey: false,
DataType: schemapb.DataType_None,
},
},
}
parser.collectionInfo.resetSchema(schema)
appendFuncs, err = parser.prepareAppendFunctions()
assert.Error(t, err)
assert.Nil(t, appendFuncs)
}
func Test_NumpyParserCheckRowCount(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
parser := createNumpyParser(t)
files := createSampleNumpyFiles(t, cm)
readers, err := parser.createReaders(files)
assert.NoError(t, err)
defer closeReaders(readers)
// succeed
segmentData := make(BlockData)
for _, reader := range readers {
fieldData, err := parser.readData(reader, 100)
assert.NoError(t, err)
segmentData[reader.fieldID] = fieldData
}
rowCount, err := parser.checkRowCount(segmentData)
assert.NoError(t, err)
assert.Equal(t, 5, rowCount)
// field data missed
delete(segmentData, 102)
rowCount, err = parser.checkRowCount(segmentData)
assert.Error(t, err)
assert.Zero(t, rowCount)
// row count mismatch
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 105,
Name: "FieldInt32",
IsPrimaryKey: false,
AutoID: false,
DataType: schemapb.DataType_Int32,
},
{
FieldID: 106,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: false,
DataType: schemapb.DataType_Int64,
},
},
}
segmentData[105] = &storage.Int32FieldData{
Data: []int32{1, 2, 3, 4},
}
segmentData[106] = &storage.Int64FieldData{
Data: []int64{1, 2, 4},
}
parser.collectionInfo.resetSchema(schema)
rowCount, err = parser.checkRowCount(segmentData)
assert.Error(t, err)
assert.Zero(t, rowCount)
// has dynamic field
schema = &schemapb.CollectionSchema{
Name: "schema",
Description: "schema",
AutoID: true,
EnableDynamicField: true,
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: false,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 102,
Name: "FieldDynamic",
IsDynamic: true,
DataType: schemapb.DataType_JSON,
},
},
}
segmentData[101] = &storage.Int64FieldData{
Data: []int64{1, 2, 4},
}
parser.collectionInfo.resetSchema(schema)
rowCount, err = parser.checkRowCount(segmentData)
assert.NoError(t, err)
assert.Equal(t, 3, rowCount)
}
func Test_NumpyParserSplitFieldsData(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
parser := createNumpyParser(t)
t.Run("segemnt data is empty", func(t *testing.T) {
err = parser.splitFieldsData(make(BlockData), nil)
assert.Error(t, err)
})
genFieldsDataFunc := func() BlockData {
segmentData := make(BlockData)
files := createSampleNumpyFiles(t, cm)
readers, err := parser.createReaders(files)
assert.NoError(t, err)
defer closeReaders(readers)
for _, reader := range readers {
fieldData, err := parser.readData(reader, 100)
assert.NoError(t, err)
segmentData[reader.fieldID] = fieldData
}
return segmentData
}
t.Run("shards number mismatch", func(t *testing.T) {
fieldsData := createFieldsData(sampleSchema(), 0)
shards := createShardsData(sampleSchema(), fieldsData, 1, []int64{1})
segmentData := genFieldsDataFunc()
err = parser.splitFieldsData(segmentData, shards)
assert.Error(t, err)
})
t.Run("checkRowCount returns error", func(t *testing.T) {
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 105,
Name: "FieldInt32",
IsPrimaryKey: false,
AutoID: false,
DataType: schemapb.DataType_Int32,
},
{
FieldID: 106,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: false,
DataType: schemapb.DataType_Int64,
},
},
}
segmentData := make(BlockData)
segmentData[105] = &storage.Int32FieldData{
Data: []int32{1, 2, 3, 4},
}
segmentData[106] = &storage.Int64FieldData{
Data: []int64{1, 2, 4},
}
parser.collectionInfo.resetSchema(schema)
parser.collectionInfo.ShardNum = 2
fieldsData := createFieldsData(schema, 0)
shards := createShardsData(schema, fieldsData, 2, []int64{1})
err = parser.splitFieldsData(segmentData, shards)
assert.Error(t, err)
})
t.Run("failed to alloc id", func(t *testing.T) {
ctx := context.Background()
parser.rowIDAllocator = newIDAllocator(ctx, t, errors.New("dummy error"))
parser.collectionInfo.resetSchema(sampleSchema())
fieldsData := createFieldsData(sampleSchema(), 0)
shards := createShardsData(sampleSchema(), fieldsData, 2, []int64{1})
segmentData := genFieldsDataFunc()
err = parser.splitFieldsData(segmentData, shards)
assert.Error(t, err)
parser.rowIDAllocator = newIDAllocator(ctx, t, nil)
})
t.Run("primary key auto-generated", func(t *testing.T) {
parser.collectionInfo.resetSchema(sampleSchema())
schema := findSchema(parser.collectionInfo.Schema, schemapb.DataType_Int64)
schema.AutoID = true
partitionID := int64(1)
fieldsData := createFieldsData(sampleSchema(), 0)
shards := createShardsData(sampleSchema(), fieldsData, 2, []int64{partitionID})
segmentData := genFieldsDataFunc()
err = parser.splitFieldsData(segmentData, shards)
assert.NoError(t, err)
assert.NotEmpty(t, parser.autoIDRange)
totalNum := 0
for i := 0; i < int(parser.collectionInfo.ShardNum); i++ {
totalNum += shards[i][partitionID][106].RowNum()
}
assert.Equal(t, segmentData[106].RowNum(), totalNum)
// target field data is nil
shards[0][partitionID][105] = nil
err = parser.splitFieldsData(segmentData, shards)
assert.Error(t, err)
schema.AutoID = false
})
t.Run("has dynamic field", func(t *testing.T) {
schema := &schemapb.CollectionSchema{
Name: "schema",
Description: "schema",
AutoID: true,
EnableDynamicField: true,
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: false,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 102,
Name: "FieldDynamic",
IsDynamic: true,
DataType: schemapb.DataType_JSON,
},
},
}
parser.collectionInfo.resetSchema(schema)
fieldsData := createFieldsData(schema, 0)
shards := createShardsData(schema, fieldsData, 2, []int64{1})
segmentData := make(BlockData)
segmentData[101] = &storage.Int64FieldData{
Data: []int64{1, 2, 4},
}
err = parser.splitFieldsData(segmentData, shards)
assert.NoError(t, err)
})
}
func Test_NumpyParserCalcRowCountPerBlock(t *testing.T) {
parser := createNumpyParser(t)
// succeed
rowCount, err := parser.calcRowCountPerBlock()
assert.NoError(t, err)
assert.Greater(t, rowCount, int64(0))
// failed to estimate row size
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "uid",
IsPrimaryKey: true,
AutoID: true,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 109,
Name: "FieldString",
IsPrimaryKey: false,
Description: "string",
DataType: schemapb.DataType_VarChar,
},
},
}
parser.collectionInfo.Schema = schema
rowCount, err = parser.calcRowCountPerBlock()
assert.Error(t, err)
assert.Zero(t, rowCount)
// no field
schema = &schemapb.CollectionSchema{
Name: "schema",
}
parser.collectionInfo.Schema = schema
rowCount, err = parser.calcRowCountPerBlock()
assert.Error(t, err)
assert.Zero(t, rowCount)
}
func Test_NumpyParserConsume(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
parser := createNumpyParser(t)
files := createSampleNumpyFiles(t, cm)
readers, err := parser.createReaders(files)
assert.NoError(t, err)
assert.Equal(t, len(sampleSchema().Fields), len(readers))
// succeed
err = parser.consume(readers)
assert.NoError(t, err)
closeReaders(readers)
// row count mismatch
parser.blockSize = 1000
readers, err = parser.createReaders(files)
assert.NoError(t, err)
parser.readData(readers[0], 1)
err = parser.consume(readers)
assert.Error(t, err)
// invalid schema
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "uid",
IsPrimaryKey: true,
AutoID: true,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 109,
Name: "dummy",
IsPrimaryKey: false,
DataType: schemapb.DataType_None,
},
},
}
parser.collectionInfo.resetSchema(schema)
err = parser.consume(readers)
assert.Error(t, err)
closeReaders(readers)
}
func Test_NumpyParserParse(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
parser := createNumpyParser(t)
parser.blockSize = 400
t.Run("validate file name failed", func(t *testing.T) {
files := []string{"dummy.npy"}
err = parser.Parse(files)
assert.Error(t, err)
})
t.Run("file doesnt exist", func(t *testing.T) {
parser.collectionInfo.resetSchema(perfSchema(4))
files := []string{"ID.npy", "Vector.npy"}
err = parser.Parse(files)
assert.Error(t, err)
})
parser.collectionInfo.resetSchema(sampleSchema())
t.Run("succeed", func(t *testing.T) {
cm := createLocalChunkManager(t)
files := createSampleNumpyFiles(t, cm)
totalRowCount := 0
parser.callFlushFunc = func(fields BlockData, shardID int, partID int64) error {
assert.LessOrEqual(t, int32(shardID), parser.collectionInfo.ShardNum)
rowCount := 0
for _, fieldData := range fields {
if rowCount == 0 {
rowCount = fieldData.RowNum()
} else {
assert.Equal(t, rowCount, fieldData.RowNum())
}
}
totalRowCount += rowCount
return nil
}
err = parser.Parse(files)
assert.NoError(t, err)
assert.Equal(t, 5, totalRowCount)
})
}
func Test_NumpyParserParse_perf(t *testing.T) {
ctx := context.Background()
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.NoError(t, err)
defer os.RemoveAll(TempFilesPath)
cm := createLocalChunkManager(t)
tr := timerecord.NewTimeRecorder("numpy parse performance")
// change the parameter to test performance
rowCount := 10000
dotValue := float32(3.1415926)
const (
dim = 128
)
idData := make([]int64, 0)
vecData := make([][dim]float32, 0)
for i := 0; i < rowCount; i++ {
var row [dim]float32
for k := 0; k < dim; k++ {
row[k] = float32(i) + dotValue
}
vecData = append(vecData, row)
idData = append(idData, int64(i))
}
tr.Record("generate large data")
createNpyFile := func(t *testing.T, fielName string, data interface{}) string {
filePath := TempFilesPath + fielName + ".npy"
content, err := CreateNumpyData(data)
assert.NoError(t, err)
err = cm.Write(ctx, filePath, content)
assert.NoError(t, err)
return filePath
}
idFilePath := createNpyFile(t, "ID", idData)
vecFilePath := createNpyFile(t, "Vector", vecData)
tr.Record("generate large numpy files")
shardNum := int32(3)
totalRowCount := 0
callFlushFunc := func(fields BlockData, shardID int, partID int64) error {
assert.LessOrEqual(t, int32(shardID), shardNum)
rowCount := 0
for _, fieldData := range fields {
if rowCount == 0 {
rowCount = fieldData.RowNum()
} else {
assert.Equal(t, rowCount, fieldData.RowNum())
}
}
totalRowCount += rowCount
return nil
}
idAllocator := newIDAllocator(ctx, t, nil)
updateProgress := func(percent int64) {
assert.Greater(t, percent, int64(0))
}
collectionInfo, err := NewCollectionInfo(perfSchema(dim), shardNum, []int64{1})
assert.NoError(t, err)
parser, err := NewNumpyParser(ctx, collectionInfo, idAllocator, 16*1024*1024, cm, callFlushFunc, updateProgress)
assert.NoError(t, err)
assert.NotNil(t, parser)
err = parser.Parse([]string{idFilePath, vecFilePath})
assert.NoError(t, err)
assert.Equal(t, rowCount, totalRowCount)
tr.Record("parse large numpy files")
}
func Test_NumpyParserHashToPartition(t *testing.T) {
ctx := context.Background()
schema := &schemapb.CollectionSchema{
Name: "schema",
Fields: []*schemapb.FieldSchema{
{
FieldID: 101,
Name: "FieldInt64",
IsPrimaryKey: true,
AutoID: true,
DataType: schemapb.DataType_Int64,
},
{
FieldID: 102,
Name: "FieldVarchar",
DataType: schemapb.DataType_VarChar,
},
{
FieldID: 103,
Name: "FieldFloat",
DataType: schemapb.DataType_Float,
},
},
}
idAllocator := newIDAllocator(ctx, t, nil)
cm := createLocalChunkManager(t)
flushFunc := func(fields BlockData, shardID int, partID int64) error {
return nil
}
collectionInfo, err := NewCollectionInfo(schema, 2, []int64{1})
assert.NoError(t, err)
parser, err := NewNumpyParser(ctx, collectionInfo, idAllocator, 100, cm, flushFunc, nil)
assert.NoError(t, err)
assert.NotNil(t, parser)
fieldsData := createFieldsData(schema, 5)
blockData := createBlockData(schema, fieldsData)
// no partition key, partition ID list greater than 1, return error
parser.collectionInfo.PartitionIDs = []int64{1, 2}
partID, err := parser.hashToPartition(blockData, 1)
assert.Error(t, err)
assert.Zero(t, partID)
// no partition key, return the only one partition ID
partitionID := int64(5)
parser.collectionInfo.PartitionIDs = []int64{partitionID}
partID, err = parser.hashToPartition(blockData, 1)
assert.NoError(t, err)
assert.Equal(t, partitionID, partID)
// has partition key
schema.Fields[1].IsPartitionKey = true
err = parser.collectionInfo.resetSchema(schema)
assert.NoError(t, err)
partitionIDs := []int64{3, 4, 5, 6}
partID, err = parser.hashToPartition(blockData, 1)
assert.NoError(t, err)
assert.Contains(t, partitionIDs, partID)
// has partition key, but value is invalid
blockData[102] = &storage.FloatFieldData{
Data: []float32{1, 2, 3, 4, 5},
}
partID, err = parser.hashToPartition(blockData, 1)
assert.Error(t, err)
assert.Zero(t, partID)
}