milvus/internal/util/importutil/import_wrapper.go

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package importutil
import (
"bufio"
"context"
"errors"
"path"
"runtime/debug"
"strconv"
"strings"
"go.uber.org/zap"
"go.uber.org/zap/zapcore"
"github.com/milvus-io/milvus/internal/allocator"
"github.com/milvus-io/milvus/internal/common"
"github.com/milvus-io/milvus/internal/log"
"github.com/milvus-io/milvus/internal/proto/commonpb"
"github.com/milvus-io/milvus/internal/proto/rootcoordpb"
"github.com/milvus-io/milvus/internal/proto/schemapb"
"github.com/milvus-io/milvus/internal/storage"
"github.com/milvus-io/milvus/internal/util/timerecord"
"github.com/milvus-io/milvus/internal/util/typeutil"
)
const (
JSONFileExt = ".json"
NumpyFileExt = ".npy"
MaxFileSize = 1 * 1024 * 1024 * 1024 // maximum size of each file
)
type ImportWrapper struct {
ctx context.Context // for canceling parse process
cancel context.CancelFunc // for canceling parse process
collectionSchema *schemapb.CollectionSchema // collection schema
shardNum int32 // sharding number of the collection
segmentSize int64 // maximum size of a segment(unit:byte)
rowIDAllocator *allocator.IDAllocator // autoid allocator
chunkManager storage.ChunkManager
callFlushFunc ImportFlushFunc // call back function to flush a segment
importResult *rootcoordpb.ImportResult // import result
reportFunc func(res *rootcoordpb.ImportResult) error // report import state to rootcoord
}
func NewImportWrapper(ctx context.Context, collectionSchema *schemapb.CollectionSchema, shardNum int32, segmentSize int64,
idAlloc *allocator.IDAllocator, cm storage.ChunkManager, flushFunc ImportFlushFunc,
importResult *rootcoordpb.ImportResult, reportFunc func(res *rootcoordpb.ImportResult) error) *ImportWrapper {
if collectionSchema == nil {
log.Error("import error: collection schema is nil")
return nil
}
// ignore the RowID field and Timestamp field
realSchema := &schemapb.CollectionSchema{
Name: collectionSchema.GetName(),
Description: collectionSchema.GetDescription(),
AutoID: collectionSchema.GetAutoID(),
Fields: make([]*schemapb.FieldSchema, 0),
}
for i := 0; i < len(collectionSchema.Fields); i++ {
schema := collectionSchema.Fields[i]
if schema.GetName() == common.RowIDFieldName || schema.GetName() == common.TimeStampFieldName {
continue
}
realSchema.Fields = append(realSchema.Fields, schema)
}
ctx, cancel := context.WithCancel(ctx)
wrapper := &ImportWrapper{
ctx: ctx,
cancel: cancel,
collectionSchema: realSchema,
shardNum: shardNum,
segmentSize: segmentSize,
rowIDAllocator: idAlloc,
callFlushFunc: flushFunc,
chunkManager: cm,
importResult: importResult,
reportFunc: reportFunc,
}
return wrapper
}
// this method can be used to cancel parse process
func (p *ImportWrapper) Cancel() error {
p.cancel()
return nil
}
func (p *ImportWrapper) printFieldsDataInfo(fieldsData map[storage.FieldID]storage.FieldData, msg string, files []string) {
stats := make([]zapcore.Field, 0)
for k, v := range fieldsData {
stats = append(stats, zap.Int(strconv.FormatInt(k, 10), v.RowNum()))
}
if len(files) > 0 {
stats = append(stats, zap.Any("files", files))
}
log.Info(msg, stats...)
}
func getFileNameAndExt(filePath string) (string, string) {
fileName := path.Base(filePath)
fileType := path.Ext(fileName)
fileNameWithoutExt := strings.TrimSuffix(fileName, fileType)
return fileNameWithoutExt, fileType
}
func (p *ImportWrapper) fileValidation(filePaths []string, rowBased bool) error {
// use this map to check duplicate file name(only for numpy file)
fileNames := make(map[string]struct{})
for i := 0; i < len(filePaths); i++ {
filePath := filePaths[i]
name, fileType := getFileNameAndExt(filePath)
_, ok := fileNames[name]
if ok {
// only check dupliate numpy file
if fileType == NumpyFileExt {
return errors.New("duplicate file: " + name + "." + fileType)
}
} else {
fileNames[name] = struct{}{}
}
// check file type
if rowBased {
if fileType != JSONFileExt {
return errors.New("unsupported file type for row-based mode: " + filePath)
}
} else {
if fileType != JSONFileExt && fileType != NumpyFileExt {
return errors.New("unsupported file type for column-based mode: " + filePath)
}
}
// check file size
size, _ := p.chunkManager.Size(filePath)
if size == 0 {
return errors.New("the file " + filePath + " is empty")
}
if size > MaxFileSize {
return errors.New("the file " + filePath + " size exceeds the maximum file size: " + strconv.FormatInt(MaxFileSize, 10) + " bytes")
}
}
return nil
}
// import process entry
// filePath and rowBased are from ImportTask
// if onlyValidate is true, this process only do validation, no data generated, callFlushFunc will not be called
func (p *ImportWrapper) Import(filePaths []string, rowBased bool, onlyValidate bool) error {
err := p.fileValidation(filePaths, rowBased)
if err != nil {
log.Error("import error: " + err.Error())
return err
}
if rowBased {
// parse and consume row-based files
// for row-based files, the JSONRowConsumer will generate autoid for primary key, and split rows into segments
// according to shard number, so the callFlushFunc will be called in the JSONRowConsumer
for i := 0; i < len(filePaths); i++ {
filePath := filePaths[i]
_, fileType := getFileNameAndExt(filePath)
log.Info("import wrapper: row-based file ", zap.Any("filePath", filePath), zap.Any("fileType", fileType))
if fileType == JSONFileExt {
err := func() error {
tr := timerecord.NewTimeRecorder("json row-based parser: " + filePath)
// for minio storage, chunkManager will download file into local memory
// for local storage, chunkManager open the file directly
file, err := p.chunkManager.Reader(filePath)
if err != nil {
return err
}
defer file.Close()
tr.Record("open reader")
// report file process state
p.importResult.State = commonpb.ImportState_ImportDownloaded
p.reportFunc(p.importResult)
// parse file
reader := bufio.NewReader(file)
parser := NewJSONParser(p.ctx, p.collectionSchema)
var consumer *JSONRowConsumer
if !onlyValidate {
flushFunc := func(fields map[storage.FieldID]storage.FieldData, shardNum int) error {
p.printFieldsDataInfo(fields, "import wrapper: prepare to flush segment", filePaths)
return p.callFlushFunc(fields, shardNum)
}
consumer = NewJSONRowConsumer(p.collectionSchema, p.rowIDAllocator, p.shardNum, p.segmentSize, flushFunc)
}
validator := NewJSONRowValidator(p.collectionSchema, consumer)
err = parser.ParseRows(reader, validator)
if err != nil {
return err
}
// for row-based files, auto-id is generated within JSONRowConsumer
if consumer != nil {
p.importResult.AutoIds = append(p.importResult.AutoIds, consumer.IDRange()...)
}
// report file process state
p.importResult.State = commonpb.ImportState_ImportParsed
p.reportFunc(p.importResult)
tr.Record("parsed")
return nil
}()
if err != nil {
log.Error("import error: "+err.Error(), zap.String("filePath", filePath))
return err
}
}
}
} else {
// parse and consume column-based files
// for column-based files, the XXXColumnConsumer only output map[string]storage.FieldData
// after all columns are parsed/consumed, we need to combine map[string]storage.FieldData into one
// and use splitFieldsData() to split fields data into segments according to shard number
fieldsData := initSegmentData(p.collectionSchema)
rowCount := 0
// function to combine column data into fieldsData
combineFunc := func(fields map[storage.FieldID]storage.FieldData) error {
if len(fields) == 0 {
return nil
}
p.printFieldsDataInfo(fields, "import wrapper: combine field data", nil)
tr := timerecord.NewTimeRecorder("combine field data")
defer tr.Elapse("finished")
for k, v := range fields {
// ignore 0 row field
if v.RowNum() == 0 {
continue
}
// each column should be only combined once
data, ok := fieldsData[k]
if ok && data.RowNum() > 0 {
return errors.New("the field " + strconv.FormatInt(k, 10) + " is duplicated")
}
// check the row count. only count non-zero row fields
if rowCount > 0 && rowCount != v.RowNum() {
return errors.New("the field " + strconv.FormatInt(k, 10) + " row count " + strconv.Itoa(v.RowNum()) + " doesn't equal " + strconv.Itoa(rowCount))
}
rowCount = v.RowNum()
// assign column data to fieldsData
fieldsData[k] = v
}
return nil
}
// parse/validate/consume data
for i := 0; i < len(filePaths); i++ {
filePath := filePaths[i]
fileName, fileType := getFileNameAndExt(filePath)
log.Info("import wrapper: column-based file ", zap.Any("filePath", filePath), zap.Any("fileType", fileType))
if fileType == JSONFileExt {
err := func() error {
tr := timerecord.NewTimeRecorder("json column-based parser: " + filePath)
// for minio storage, chunkManager will download file into local memory
// for local storage, chunkManager open the file directly
file, err := p.chunkManager.Reader(filePath)
if err != nil {
return err
}
defer file.Close()
tr.Record("open reader")
// report file process state
p.importResult.State = commonpb.ImportState_ImportDownloaded
p.reportFunc(p.importResult)
// parse file
reader := bufio.NewReader(file)
parser := NewJSONParser(p.ctx, p.collectionSchema)
var consumer *JSONColumnConsumer
if !onlyValidate {
consumer = NewJSONColumnConsumer(p.collectionSchema, combineFunc)
}
validator := NewJSONColumnValidator(p.collectionSchema, consumer)
err = parser.ParseColumns(reader, validator)
if err != nil {
return err
}
// report file process state
p.importResult.State = commonpb.ImportState_ImportParsed
p.reportFunc(p.importResult)
tr.Record("parsed")
return nil
}()
if err != nil {
log.Error("import error: "+err.Error(), zap.String("filePath", filePath))
return err
}
} else if fileType == NumpyFileExt {
err := func() error {
tr := timerecord.NewTimeRecorder("numpy parser: " + filePath)
// for minio storage, chunkManager will download file into local memory
// for local storage, chunkManager open the file directly
file, err := p.chunkManager.Reader(filePath)
if err != nil {
return err
}
defer file.Close()
tr.Record("open reader")
// report file process state
p.importResult.State = commonpb.ImportState_ImportDownloaded
p.reportFunc(p.importResult)
var id storage.FieldID
for _, field := range p.collectionSchema.Fields {
if field.GetName() == fileName {
id = field.GetFieldID()
}
}
// the numpy parser return a storage.FieldData, here construct a map[string]storage.FieldData to combine
flushFunc := func(field storage.FieldData) error {
fields := make(map[storage.FieldID]storage.FieldData)
fields[id] = field
return combineFunc(fields)
}
// for numpy file, we say the file name(without extension) is the filed name
parser := NewNumpyParser(p.ctx, p.collectionSchema, flushFunc)
err = parser.Parse(file, fileName, onlyValidate)
if err != nil {
return err
}
// report file process state
p.importResult.State = commonpb.ImportState_ImportParsed
p.reportFunc(p.importResult)
tr.Record("parsed")
return nil
}()
if err != nil {
log.Error("import error: "+err.Error(), zap.String("filePath", filePath))
return err
}
}
}
// split fields data into segments
err := p.splitFieldsData(fieldsData, filePaths)
if err != nil {
log.Error("import error: " + err.Error())
return err
}
}
debug.FreeOSMemory()
// report file process state
p.importResult.State = commonpb.ImportState_ImportPersisted
return p.reportFunc(p.importResult)
}
func (p *ImportWrapper) appendFunc(schema *schemapb.FieldSchema) func(src storage.FieldData, n int, target storage.FieldData) error {
switch schema.DataType {
case schemapb.DataType_Bool:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.BoolFieldData)
arr.Data = append(arr.Data, src.GetRow(n).(bool))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Float:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.FloatFieldData)
arr.Data = append(arr.Data, src.GetRow(n).(float32))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Double:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.DoubleFieldData)
arr.Data = append(arr.Data, src.GetRow(n).(float64))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Int8:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.Int8FieldData)
arr.Data = append(arr.Data, src.GetRow(n).(int8))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Int16:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.Int16FieldData)
arr.Data = append(arr.Data, src.GetRow(n).(int16))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Int32:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.Int32FieldData)
arr.Data = append(arr.Data, src.GetRow(n).(int32))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_Int64:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.Int64FieldData)
arr.Data = append(arr.Data, src.GetRow(n).(int64))
arr.NumRows[0]++
return nil
}
case schemapb.DataType_BinaryVector:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.BinaryVectorFieldData)
arr.Data = append(arr.Data, src.GetRow(n).([]byte)...)
arr.NumRows[0]++
return nil
}
case schemapb.DataType_FloatVector:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.FloatVectorFieldData)
arr.Data = append(arr.Data, src.GetRow(n).([]float32)...)
arr.NumRows[0]++
return nil
}
case schemapb.DataType_String, schemapb.DataType_VarChar:
return func(src storage.FieldData, n int, target storage.FieldData) error {
arr := target.(*storage.StringFieldData)
arr.Data = append(arr.Data, src.GetRow(n).(string))
return nil
}
default:
return nil
}
}
func (p *ImportWrapper) splitFieldsData(fieldsData map[storage.FieldID]storage.FieldData, files []string) error {
if len(fieldsData) == 0 {
return errors.New("import error: fields data is empty")
}
tr := timerecord.NewTimeRecorder("split field data")
defer tr.Elapse("finished")
// check existence of each field
// check row count, all fields row count must be equal
// firstly get the max row count
rowCount := 0
rowCounter := make(map[string]int)
var primaryKey *schemapb.FieldSchema
for i := 0; i < len(p.collectionSchema.Fields); i++ {
schema := p.collectionSchema.Fields[i]
if schema.GetIsPrimaryKey() {
primaryKey = schema
}
if !schema.GetAutoID() {
v, ok := fieldsData[schema.GetFieldID()]
if !ok {
return errors.New("import error: field " + schema.GetName() + " not provided")
}
rowCounter[schema.GetName()] = v.RowNum()
if v.RowNum() > rowCount {
rowCount = v.RowNum()
}
}
}
if primaryKey == nil {
return errors.New("import error: primary key field is not found")
}
for name, count := range rowCounter {
if count != rowCount {
return errors.New("import error: field " + name + " row count " + strconv.Itoa(count) + " is not equal to other fields row count " + strconv.Itoa(rowCount))
}
}
primaryData, ok := fieldsData[primaryKey.GetFieldID()]
if !ok {
return errors.New("import error: primary key field is not provided")
}
// generate auto id for primary key and rowid field
var rowIDBegin typeutil.UniqueID
var rowIDEnd typeutil.UniqueID
rowIDBegin, rowIDEnd, _ = p.rowIDAllocator.Alloc(uint32(rowCount))
rowIDField := fieldsData[common.RowIDField]
rowIDFieldArr := rowIDField.(*storage.Int64FieldData)
for i := rowIDBegin; i < rowIDEnd; i++ {
rowIDFieldArr.Data = append(rowIDFieldArr.Data, rowIDBegin+i)
}
if primaryKey.GetAutoID() {
log.Info("import wrapper: generating auto-id", zap.Any("rowCount", rowCount))
primaryDataArr := primaryData.(*storage.Int64FieldData)
for i := rowIDBegin; i < rowIDEnd; i++ {
primaryDataArr.Data = append(primaryDataArr.Data, rowIDBegin+i)
}
p.importResult.AutoIds = append(p.importResult.AutoIds, rowIDBegin, rowIDEnd)
}
if primaryData.RowNum() <= 0 {
return errors.New("import error: primary key " + primaryKey.GetName() + " not provided")
}
// prepare segemnts
segmentsData := make([]map[storage.FieldID]storage.FieldData, 0, p.shardNum)
for i := 0; i < int(p.shardNum); i++ {
segmentData := initSegmentData(p.collectionSchema)
if segmentData == nil {
return nil
}
segmentsData = append(segmentsData, segmentData)
}
// prepare append functions
appendFunctions := make(map[string]func(src storage.FieldData, n int, target storage.FieldData) error)
for i := 0; i < len(p.collectionSchema.Fields); i++ {
schema := p.collectionSchema.Fields[i]
appendFunc := p.appendFunc(schema)
if appendFunc == nil {
return errors.New("import error: unsupported field data type")
}
appendFunctions[schema.GetName()] = appendFunc
}
// split data into segments
for i := 0; i < rowCount; i++ {
// hash to a shard number
var shard uint32
pk := primaryData.GetRow(i)
strPK, ok := interface{}(pk).(string)
if ok {
hash := typeutil.HashString2Uint32(strPK)
shard = hash % uint32(p.shardNum)
} else {
intPK, ok := interface{}(pk).(int64)
if !ok {
return errors.New("import error: primary key field must be int64 or varchar")
}
hash, _ := typeutil.Hash32Int64(intPK)
shard = hash % uint32(p.shardNum)
}
// set rowID field
rowIDField := segmentsData[shard][common.RowIDField].(*storage.Int64FieldData)
rowIDField.Data = append(rowIDField.Data, rowIDFieldArr.GetRow(i).(int64))
// append row to shard
for k := 0; k < len(p.collectionSchema.Fields); k++ {
schema := p.collectionSchema.Fields[k]
srcData := fieldsData[schema.GetFieldID()]
targetData := segmentsData[shard][schema.GetFieldID()]
appendFunc := appendFunctions[schema.GetName()]
err := appendFunc(srcData, i, targetData)
if err != nil {
return err
}
}
}
// call flush function
for i := 0; i < int(p.shardNum); i++ {
segmentData := segmentsData[i]
p.printFieldsDataInfo(segmentData, "import wrapper: prepare to flush segment", files)
err := p.callFlushFunc(segmentData, i)
if err != nil {
return err
}
}
return nil
}