mirror of
https://gitee.com/milvus-io/milvus.git
synced 2024-12-04 21:09:06 +08:00
630 lines
18 KiB
Go
630 lines
18 KiB
Go
// Licensed to the LF AI & Data foundation under one
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// or more contributor license agreements. See the NOTICE file
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// distributed with this work for additional information
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// regarding copyright ownership. The ASF licenses this file
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// to you under the Apache License, Version 2.0 (the
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// "License"); you may not use this file except in compliance
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// with the License. You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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package parquet
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import (
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"context"
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"encoding/json"
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"fmt"
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"github.com/apache/arrow/go/v12/arrow"
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"github.com/apache/arrow/go/v12/arrow/array"
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"github.com/apache/arrow/go/v12/parquet/pqarrow"
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"github.com/samber/lo"
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"golang.org/x/exp/constraints"
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"github.com/milvus-io/milvus-proto/go-api/v2/schemapb"
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"github.com/milvus-io/milvus/internal/storage"
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"github.com/milvus-io/milvus/pkg/util/merr"
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"github.com/milvus-io/milvus/pkg/util/typeutil"
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)
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type FieldReader struct {
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columnIndex int
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columnReader *pqarrow.ColumnReader
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dim int
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field *schemapb.FieldSchema
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}
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func NewFieldReader(ctx context.Context, reader *pqarrow.FileReader, columnIndex int, field *schemapb.FieldSchema) (*FieldReader, error) {
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columnReader, err := reader.GetColumn(ctx, columnIndex)
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if err != nil {
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return nil, err
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}
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var dim int64 = 1
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if typeutil.IsVectorType(field.GetDataType()) && !typeutil.IsSparseFloatVectorType(field.GetDataType()) {
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dim, err = typeutil.GetDim(field)
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if err != nil {
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return nil, err
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}
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}
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cr := &FieldReader{
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columnIndex: columnIndex,
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columnReader: columnReader,
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dim: int(dim),
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field: field,
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}
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return cr, nil
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}
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func (c *FieldReader) Next(count int64) (any, error) {
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switch c.field.GetDataType() {
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case schemapb.DataType_Bool:
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return ReadBoolData(c, count)
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case schemapb.DataType_Int8:
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return ReadIntegerOrFloatData[int8](c, count)
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case schemapb.DataType_Int16:
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return ReadIntegerOrFloatData[int16](c, count)
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case schemapb.DataType_Int32:
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return ReadIntegerOrFloatData[int32](c, count)
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case schemapb.DataType_Int64:
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return ReadIntegerOrFloatData[int64](c, count)
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case schemapb.DataType_Float:
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data, err := ReadIntegerOrFloatData[float32](c, count)
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if err != nil {
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return nil, err
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}
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if data == nil {
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return nil, nil
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}
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return data, typeutil.VerifyFloats32(data.([]float32))
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case schemapb.DataType_Double:
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data, err := ReadIntegerOrFloatData[float64](c, count)
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if err != nil {
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return nil, err
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}
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if data == nil {
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return nil, nil
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}
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return data, typeutil.VerifyFloats64(data.([]float64))
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case schemapb.DataType_VarChar, schemapb.DataType_String:
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return ReadStringData(c, count)
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case schemapb.DataType_JSON:
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// JSON field read data from string array Parquet
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data, err := ReadStringData(c, count)
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if err != nil {
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return nil, err
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}
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if data == nil {
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return nil, nil
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}
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byteArr := make([][]byte, 0)
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for _, str := range data.([]string) {
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var dummy interface{}
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err = json.Unmarshal([]byte(str), &dummy)
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if err != nil {
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return nil, err
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}
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if c.field.GetIsDynamic() {
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var dummy2 map[string]interface{}
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err = json.Unmarshal([]byte(str), &dummy2)
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if err != nil {
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return nil, err
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}
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}
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byteArr = append(byteArr, []byte(str))
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}
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return byteArr, nil
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case schemapb.DataType_BinaryVector, schemapb.DataType_Float16Vector, schemapb.DataType_BFloat16Vector:
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return ReadBinaryData(c, count)
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case schemapb.DataType_FloatVector:
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arrayData, err := ReadIntegerOrFloatArrayData[float32](c, count)
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if err != nil {
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return nil, err
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}
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if arrayData == nil {
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return nil, nil
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}
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vectors := lo.Flatten(arrayData.([][]float32))
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return vectors, nil
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case schemapb.DataType_SparseFloatVector:
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return ReadBinaryDataForSparseFloatVector(c, count)
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case schemapb.DataType_Array:
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data := make([]*schemapb.ScalarField, 0, count)
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elementType := c.field.GetElementType()
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switch elementType {
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case schemapb.DataType_Bool:
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boolArray, err := ReadBoolArrayData(c, count)
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if err != nil {
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return nil, err
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}
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if boolArray == nil {
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return nil, nil
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}
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for _, elementArray := range boolArray.([][]bool) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_BoolData{
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BoolData: &schemapb.BoolArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Int8:
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int8Array, err := ReadIntegerOrFloatArrayData[int32](c, count)
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if err != nil {
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return nil, err
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}
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if int8Array == nil {
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return nil, nil
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}
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for _, elementArray := range int8Array.([][]int32) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_IntData{
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IntData: &schemapb.IntArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Int16:
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int16Array, err := ReadIntegerOrFloatArrayData[int32](c, count)
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if err != nil {
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return nil, err
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}
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if int16Array == nil {
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return nil, nil
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}
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for _, elementArray := range int16Array.([][]int32) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_IntData{
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IntData: &schemapb.IntArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Int32:
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int32Array, err := ReadIntegerOrFloatArrayData[int32](c, count)
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if err != nil {
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return nil, err
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}
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if int32Array == nil {
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return nil, nil
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}
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for _, elementArray := range int32Array.([][]int32) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_IntData{
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IntData: &schemapb.IntArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Int64:
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int64Array, err := ReadIntegerOrFloatArrayData[int64](c, count)
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if err != nil {
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return nil, err
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}
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if int64Array == nil {
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return nil, nil
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}
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for _, elementArray := range int64Array.([][]int64) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_LongData{
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LongData: &schemapb.LongArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Float:
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float32Array, err := ReadIntegerOrFloatArrayData[float32](c, count)
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if err != nil {
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return nil, err
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}
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if float32Array == nil {
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return nil, nil
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}
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for _, elementArray := range float32Array.([][]float32) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_FloatData{
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FloatData: &schemapb.FloatArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_Double:
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float64Array, err := ReadIntegerOrFloatArrayData[float64](c, count)
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if err != nil {
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return nil, err
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}
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if float64Array == nil {
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return nil, nil
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}
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for _, elementArray := range float64Array.([][]float64) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_DoubleData{
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DoubleData: &schemapb.DoubleArray{
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Data: elementArray,
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},
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},
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})
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}
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case schemapb.DataType_VarChar, schemapb.DataType_String:
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stringArray, err := ReadStringArrayData(c, count)
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if err != nil {
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return nil, err
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}
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if stringArray == nil {
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return nil, nil
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}
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for _, elementArray := range stringArray.([][]string) {
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data = append(data, &schemapb.ScalarField{
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Data: &schemapb.ScalarField_StringData{
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StringData: &schemapb.StringArray{
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Data: elementArray,
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},
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},
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})
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}
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default:
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return nil, merr.WrapErrImportFailed(fmt.Sprintf("unsupported data type '%s' for array field '%s'",
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elementType.String(), c.field.GetName()))
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}
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return data, nil
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default:
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return nil, merr.WrapErrImportFailed(fmt.Sprintf("unsupported data type '%s' for field '%s'",
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c.field.GetDataType().String(), c.field.GetName()))
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}
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}
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func (c *FieldReader) Close() {}
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func ReadBoolData(pcr *FieldReader, count int64) (any, error) {
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([]bool, 0, count)
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for _, chunk := range chunked.Chunks() {
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dataNums := chunk.Data().Len()
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chunkData := make([]bool, dataNums)
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boolReader, ok := chunk.(*array.Boolean)
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if !ok {
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return nil, WrapTypeErr("bool", chunk.DataType().Name(), pcr.field)
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}
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for i := 0; i < dataNums; i++ {
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chunkData[i] = boolReader.Value(i)
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}
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data = append(data, chunkData...)
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}
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if len(data) == 0 {
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return nil, nil
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}
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return data, nil
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}
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func ReadIntegerOrFloatData[T constraints.Integer | constraints.Float](pcr *FieldReader, count int64) (any, error) {
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([]T, 0, count)
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for _, chunk := range chunked.Chunks() {
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dataNums := chunk.Data().Len()
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chunkData := make([]T, dataNums)
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switch chunk.DataType().ID() {
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case arrow.INT8:
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int8Reader := chunk.(*array.Int8)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(int8Reader.Value(i))
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}
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case arrow.INT16:
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int16Reader := chunk.(*array.Int16)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(int16Reader.Value(i))
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}
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case arrow.INT32:
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int32Reader := chunk.(*array.Int32)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(int32Reader.Value(i))
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}
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case arrow.INT64:
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int64Reader := chunk.(*array.Int64)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(int64Reader.Value(i))
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}
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case arrow.FLOAT32:
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float32Reader := chunk.(*array.Float32)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(float32Reader.Value(i))
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}
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case arrow.FLOAT64:
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float64Reader := chunk.(*array.Float64)
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for i := 0; i < dataNums; i++ {
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chunkData[i] = T(float64Reader.Value(i))
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}
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default:
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return nil, WrapTypeErr("integer|float", chunk.DataType().Name(), pcr.field)
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}
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data = append(data, chunkData...)
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}
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if len(data) == 0 {
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return nil, nil
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}
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return data, nil
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}
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func ReadStringData(pcr *FieldReader, count int64) (any, error) {
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([]string, 0, count)
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for _, chunk := range chunked.Chunks() {
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dataNums := chunk.Data().Len()
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chunkData := make([]string, dataNums)
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stringReader, ok := chunk.(*array.String)
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if !ok {
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return nil, WrapTypeErr("string", chunk.DataType().Name(), pcr.field)
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}
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for i := 0; i < dataNums; i++ {
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chunkData[i] = stringReader.Value(i)
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}
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data = append(data, chunkData...)
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}
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if len(data) == 0 {
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return nil, nil
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}
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return data, nil
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}
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func ReadBinaryData(pcr *FieldReader, count int64) (any, error) {
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dataType := pcr.field.GetDataType()
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([]byte, 0, count)
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for _, chunk := range chunked.Chunks() {
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rows := chunk.Data().Len()
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switch chunk.DataType().ID() {
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case arrow.BINARY:
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binaryReader := chunk.(*array.Binary)
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for i := 0; i < rows; i++ {
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data = append(data, binaryReader.Value(i)...)
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}
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case arrow.LIST:
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listReader := chunk.(*array.List)
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if !isVectorAligned(listReader.Offsets(), pcr.dim, dataType) {
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return nil, merr.WrapErrImportFailed("%s not aligned", dataType.String())
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}
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uint8Reader, ok := listReader.ListValues().(*array.Uint8)
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if !ok {
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return nil, WrapTypeErr("binary", listReader.ListValues().DataType().Name(), pcr.field)
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}
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data = append(data, uint8Reader.Uint8Values()...)
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default:
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return nil, WrapTypeErr("binary", chunk.DataType().Name(), pcr.field)
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}
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}
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if len(data) == 0 {
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return nil, nil
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}
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return data, nil
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}
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func ReadBinaryDataForSparseFloatVector(pcr *FieldReader, count int64) (any, error) {
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([][]byte, 0, count)
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maxDim := uint32(0)
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for _, chunk := range chunked.Chunks() {
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rows := chunk.Data().Len()
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listReader := chunk.(*array.List)
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offsets := listReader.Offsets()
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if !isVectorAligned(offsets, pcr.dim, schemapb.DataType_SparseFloatVector) {
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return nil, merr.WrapErrImportFailed("%s not aligned", schemapb.DataType_SparseFloatVector.String())
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}
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uint8Reader, ok := listReader.ListValues().(*array.Uint8)
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if !ok {
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return nil, WrapTypeErr("binary", listReader.ListValues().DataType().Name(), pcr.field)
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}
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vecData := uint8Reader.Uint8Values()
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for i := 0; i < rows; i++ {
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elemCount := int((offsets[i+1] - offsets[i]) / 8)
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rowVec := vecData[offsets[i]:offsets[i+1]]
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data = append(data, rowVec)
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maxIdx := typeutil.SparseFloatRowIndexAt(rowVec, elemCount-1)
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if maxIdx+1 > maxDim {
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maxDim = maxIdx + 1
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}
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}
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}
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return &storage.SparseFloatVectorFieldData{
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SparseFloatArray: schemapb.SparseFloatArray{
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Dim: int64(maxDim),
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Contents: data,
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},
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}, nil
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}
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func checkVectorAlignWithDim(offsets []int32, dim int32) bool {
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for i := 1; i < len(offsets); i++ {
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if offsets[i]-offsets[i-1] != dim {
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return false
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}
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}
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return true
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}
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func checkSparseFloatVectorAlign(offsets []int32) bool {
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// index: 4 bytes, value: 4 bytes
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for i := 1; i < len(offsets); i++ {
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if (offsets[i]-offsets[i-1])%8 != 0 {
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return false
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}
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}
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return true
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}
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func isVectorAligned(offsets []int32, dim int, dataType schemapb.DataType) bool {
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if len(offsets) < 1 {
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return false
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}
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switch dataType {
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case schemapb.DataType_BinaryVector:
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return checkVectorAlignWithDim(offsets, int32(dim/8))
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case schemapb.DataType_FloatVector:
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return checkVectorAlignWithDim(offsets, int32(dim))
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case schemapb.DataType_Float16Vector, schemapb.DataType_BFloat16Vector:
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return checkVectorAlignWithDim(offsets, int32(dim*2))
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case schemapb.DataType_SparseFloatVector:
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return checkSparseFloatVectorAlign(offsets)
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default:
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return false
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}
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}
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|
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func ReadBoolArrayData(pcr *FieldReader, count int64) (any, error) {
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chunked, err := pcr.columnReader.NextBatch(count)
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if err != nil {
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return nil, err
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}
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data := make([][]bool, 0, count)
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for _, chunk := range chunked.Chunks() {
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listReader, ok := chunk.(*array.List)
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if !ok {
|
|
return nil, WrapTypeErr("list", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
boolReader, ok := listReader.ListValues().(*array.Boolean)
|
|
if !ok {
|
|
return nil, WrapTypeErr("boolArray", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
offsets := listReader.Offsets()
|
|
for i := 1; i < len(offsets); i++ {
|
|
start, end := offsets[i-1], offsets[i]
|
|
elementData := make([]bool, 0, end-start)
|
|
for j := start; j < end; j++ {
|
|
elementData = append(elementData, boolReader.Value(int(j)))
|
|
}
|
|
data = append(data, elementData)
|
|
}
|
|
}
|
|
if len(data) == 0 {
|
|
return nil, nil
|
|
}
|
|
return data, nil
|
|
}
|
|
|
|
func ReadIntegerOrFloatArrayData[T constraints.Integer | constraints.Float](pcr *FieldReader, count int64) (any, error) {
|
|
chunked, err := pcr.columnReader.NextBatch(count)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
data := make([][]T, 0, count)
|
|
|
|
getDataFunc := func(offsets []int32, getValue func(int) T) {
|
|
for i := 1; i < len(offsets); i++ {
|
|
start, end := offsets[i-1], offsets[i]
|
|
elementData := make([]T, 0, end-start)
|
|
for j := start; j < end; j++ {
|
|
elementData = append(elementData, getValue(int(j)))
|
|
}
|
|
data = append(data, elementData)
|
|
}
|
|
}
|
|
for _, chunk := range chunked.Chunks() {
|
|
listReader, ok := chunk.(*array.List)
|
|
if !ok {
|
|
return nil, WrapTypeErr("list", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
offsets := listReader.Offsets()
|
|
dataType := pcr.field.GetDataType()
|
|
if typeutil.IsVectorType(dataType) && !isVectorAligned(offsets, pcr.dim, dataType) {
|
|
return nil, merr.WrapErrImportFailed("%s not aligned", dataType.String())
|
|
}
|
|
valueReader := listReader.ListValues()
|
|
switch valueReader.DataType().ID() {
|
|
case arrow.INT8:
|
|
int8Reader := valueReader.(*array.Int8)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(int8Reader.Value(i))
|
|
})
|
|
case arrow.INT16:
|
|
int16Reader := valueReader.(*array.Int16)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(int16Reader.Value(i))
|
|
})
|
|
case arrow.INT32:
|
|
int32Reader := valueReader.(*array.Int32)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(int32Reader.Value(i))
|
|
})
|
|
case arrow.INT64:
|
|
int64Reader := valueReader.(*array.Int64)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(int64Reader.Value(i))
|
|
})
|
|
case arrow.FLOAT32:
|
|
float32Reader := valueReader.(*array.Float32)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(float32Reader.Value(i))
|
|
})
|
|
case arrow.FLOAT64:
|
|
float64Reader := valueReader.(*array.Float64)
|
|
getDataFunc(offsets, func(i int) T {
|
|
return T(float64Reader.Value(i))
|
|
})
|
|
default:
|
|
return nil, WrapTypeErr("integerArray|floatArray", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
}
|
|
if len(data) == 0 {
|
|
return nil, nil
|
|
}
|
|
return data, nil
|
|
}
|
|
|
|
func ReadStringArrayData(pcr *FieldReader, count int64) (any, error) {
|
|
chunked, err := pcr.columnReader.NextBatch(count)
|
|
if err != nil {
|
|
return nil, err
|
|
}
|
|
data := make([][]string, 0, count)
|
|
for _, chunk := range chunked.Chunks() {
|
|
listReader, ok := chunk.(*array.List)
|
|
if !ok {
|
|
return nil, WrapTypeErr("list", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
stringReader, ok := listReader.ListValues().(*array.String)
|
|
if !ok {
|
|
return nil, WrapTypeErr("stringArray", chunk.DataType().Name(), pcr.field)
|
|
}
|
|
offsets := listReader.Offsets()
|
|
for i := 1; i < len(offsets); i++ {
|
|
start, end := offsets[i-1], offsets[i]
|
|
elementData := make([]string, 0, end-start)
|
|
for j := start; j < end; j++ {
|
|
elementData = append(elementData, stringReader.Value(int(j)))
|
|
}
|
|
data = append(data, elementData)
|
|
}
|
|
}
|
|
if len(data) == 0 {
|
|
return nil, nil
|
|
}
|
|
return data, nil
|
|
}
|