milvus/internal/util/importutil/numpy_adapter_test.go
groot c6151ad351
Parse utf32 string of numpy file (#20176)
Signed-off-by: groot <yihua.mo@zilliz.com>

Signed-off-by: groot <yihua.mo@zilliz.com>
2022-10-31 17:39:34 +08:00

684 lines
17 KiB
Go

// Licensed to the LF AI & Data foundation under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
package importutil
import (
"encoding/binary"
"io"
"os"
"strconv"
"strings"
"testing"
"github.com/milvus-io/milvus-proto/go-api/schemapb"
"github.com/sbinet/npyio/npy"
"github.com/stretchr/testify/assert"
)
type MockReader struct {
}
func (r *MockReader) Read(p []byte) (n int, err error) {
return 0, io.EOF
}
func Test_CreateNumpyFile(t *testing.T) {
// directory doesn't exist
data1 := []float32{1, 2, 3, 4, 5}
err := CreateNumpyFile("/dummy_not_exist/dummy.npy", data1)
assert.NotNil(t, err)
// invalid data type
data2 := make(map[string]int)
err = CreateNumpyFile("/tmp/dummy.npy", data2)
assert.NotNil(t, err)
}
func Test_CreateNumpyData(t *testing.T) {
// directory doesn't exist
data1 := []float32{1, 2, 3, 4, 5}
buf, err := CreateNumpyData(data1)
assert.NotNil(t, buf)
assert.Nil(t, err)
// invalid data type
data2 := make(map[string]int)
buf, err = CreateNumpyData(data2)
assert.NotNil(t, err)
assert.Nil(t, buf)
}
func Test_ConvertNumpyType(t *testing.T) {
checkFunc := func(inputs []string, output schemapb.DataType) {
for i := 0; i < len(inputs); i++ {
dt, err := convertNumpyType(inputs[i])
assert.Nil(t, err)
assert.Equal(t, output, dt)
}
}
checkFunc([]string{"b1", "<b1", "|b1", "bool"}, schemapb.DataType_Bool)
checkFunc([]string{"i1", "<i1", "|i1", ">i1", "int8"}, schemapb.DataType_Int8)
checkFunc([]string{"i2", "<i2", "|i2", ">i2", "int16"}, schemapb.DataType_Int16)
checkFunc([]string{"i4", "<i4", "|i4", ">i4", "int32"}, schemapb.DataType_Int32)
checkFunc([]string{"i8", "<i8", "|i8", ">i8", "int64"}, schemapb.DataType_Int64)
checkFunc([]string{"f4", "<f4", "|f4", ">f4", "float32"}, schemapb.DataType_Float)
checkFunc([]string{"f8", "<f8", "|f8", ">f8", "float64"}, schemapb.DataType_Double)
dt, err := convertNumpyType("dummy")
assert.NotNil(t, err)
assert.Equal(t, schemapb.DataType_None, dt)
}
func Test_StringLen(t *testing.T) {
len, utf, err := stringLen("S1")
assert.Equal(t, 1, len)
assert.False(t, utf)
assert.Nil(t, err)
len, utf, err = stringLen("2S")
assert.Equal(t, 2, len)
assert.False(t, utf)
assert.Nil(t, err)
len, utf, err = stringLen("<U3")
assert.Equal(t, 3, len)
assert.True(t, utf)
assert.Nil(t, err)
len, utf, err = stringLen(">4U")
assert.Equal(t, 4, len)
assert.True(t, utf)
assert.Nil(t, err)
len, utf, err = stringLen("dummy")
assert.NotNil(t, err)
assert.Equal(t, 0, len)
assert.False(t, utf)
}
func Test_NumpyAdapterSetByteOrder(t *testing.T) {
adapter := &NumpyAdapter{
reader: nil,
npyReader: &npy.Reader{},
}
assert.Nil(t, adapter.Reader())
assert.NotNil(t, adapter.NpyReader())
adapter.npyReader.Header.Descr.Type = "<i8"
adapter.setByteOrder()
assert.Equal(t, binary.LittleEndian, adapter.order)
adapter.npyReader.Header.Descr.Type = ">i8"
adapter.setByteOrder()
assert.Equal(t, binary.BigEndian, adapter.order)
}
func Test_NumpyAdapterReadError(t *testing.T) {
adapter := &NumpyAdapter{
reader: nil,
npyReader: nil,
}
// reader size is zero
t.Run("test size is zero", func(t *testing.T) {
_, err := adapter.ReadBool(0)
assert.NotNil(t, err)
_, err = adapter.ReadUint8(0)
assert.NotNil(t, err)
_, err = adapter.ReadInt8(0)
assert.NotNil(t, err)
_, err = adapter.ReadInt16(0)
assert.NotNil(t, err)
_, err = adapter.ReadInt32(0)
assert.NotNil(t, err)
_, err = adapter.ReadInt64(0)
assert.NotNil(t, err)
_, err = adapter.ReadFloat32(0)
assert.NotNil(t, err)
_, err = adapter.ReadFloat64(0)
assert.NotNil(t, err)
})
adapter = &NumpyAdapter{
reader: &MockReader{},
npyReader: &npy.Reader{},
}
t.Run("test read bool", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "bool"
data, err := adapter.ReadBool(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadBool(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read uint8", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "u1"
data, err := adapter.ReadUint8(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadUint8(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read int8", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "i1"
data, err := adapter.ReadInt8(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadInt8(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read int16", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "i2"
data, err := adapter.ReadInt16(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadInt16(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read int32", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "i4"
data, err := adapter.ReadInt32(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadInt32(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read int64", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "i8"
data, err := adapter.ReadInt64(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadInt64(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read float", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "f4"
data, err := adapter.ReadFloat32(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadFloat32(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read double", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "f8"
data, err := adapter.ReadFloat64(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadFloat64(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
t.Run("test read varchar", func(t *testing.T) {
adapter.npyReader.Header.Descr.Type = "U3"
data, err := adapter.ReadString(1)
assert.Nil(t, data)
assert.NotNil(t, err)
adapter.npyReader.Header.Descr.Type = "dummy"
data, err = adapter.ReadString(1)
assert.Nil(t, data)
assert.NotNil(t, err)
})
}
func Test_NumpyAdapterRead(t *testing.T) {
err := os.MkdirAll(TempFilesPath, os.ModePerm)
assert.Nil(t, err)
defer os.RemoveAll(TempFilesPath)
t.Run("test read bool", func(t *testing.T) {
filePath := TempFilesPath + "bool.npy"
data := []bool{true, false, true, false}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadBool(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadBool(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadBool(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
// incorrect type read
resu1, err := adapter.ReadUint8(len(data))
assert.NotNil(t, err)
assert.Nil(t, resu1)
resi1, err := adapter.ReadInt8(len(data))
assert.NotNil(t, err)
assert.Nil(t, resi1)
resi2, err := adapter.ReadInt16(len(data))
assert.NotNil(t, err)
assert.Nil(t, resi2)
resi4, err := adapter.ReadInt32(len(data))
assert.NotNil(t, err)
assert.Nil(t, resi4)
resi8, err := adapter.ReadInt64(len(data))
assert.NotNil(t, err)
assert.Nil(t, resi8)
resf4, err := adapter.ReadFloat32(len(data))
assert.NotNil(t, err)
assert.Nil(t, resf4)
resf8, err := adapter.ReadFloat64(len(data))
assert.NotNil(t, err)
assert.Nil(t, resf8)
})
t.Run("test read uint8", func(t *testing.T) {
filePath := TempFilesPath + "uint8.npy"
data := []uint8{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadUint8(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadUint8(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadUint8(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
// incorrect type read
resb, err := adapter.ReadBool(len(data))
assert.NotNil(t, err)
assert.Nil(t, resb)
})
t.Run("test read int8", func(t *testing.T) {
filePath := TempFilesPath + "int8.npy"
data := []int8{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadInt8(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadInt8(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadInt8(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read int16", func(t *testing.T) {
filePath := TempFilesPath + "int16.npy"
data := []int16{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadInt16(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadInt16(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadInt16(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read int32", func(t *testing.T) {
filePath := TempFilesPath + "int32.npy"
data := []int32{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadInt32(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadInt32(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadInt32(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read int64", func(t *testing.T) {
filePath := TempFilesPath + "int64.npy"
data := []int64{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadInt64(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadInt64(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadInt64(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read float", func(t *testing.T) {
filePath := TempFilesPath + "float.npy"
data := []float32{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadFloat32(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadFloat32(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadFloat32(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read double", func(t *testing.T) {
filePath := TempFilesPath + "double.npy"
data := []float64{1, 2, 3, 4, 5, 6}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadFloat64(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadFloat64(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadFloat64(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read ascii characters with ansi", func(t *testing.T) {
npyReader := &npy.Reader{
Header: npy.Header{},
}
data := make([]byte, 0)
values := []string{"ab", "ccc", "d"}
maxLen := 0
for _, str := range values {
if len(str) > maxLen {
maxLen = len(str)
}
}
for _, str := range values {
for i := 0; i < maxLen; i++ {
if i < len(str) {
data = append(data, str[i])
} else {
data = append(data, 0)
}
}
}
npyReader.Header.Descr.Shape = append(npyReader.Header.Descr.Shape, len(values))
adapter := &NumpyAdapter{
reader: strings.NewReader(string(data)),
npyReader: npyReader,
readPosition: 0,
dataType: schemapb.DataType_VarChar,
}
// count should greater than 0
res, err := adapter.ReadString(0)
assert.NotNil(t, err)
assert.Nil(t, res)
// maxLen is zero
npyReader.Header.Descr.Type = "S0"
res, err = adapter.ReadString(1)
assert.NotNil(t, err)
assert.Nil(t, res)
npyReader.Header.Descr.Type = "S" + strconv.FormatInt(int64(maxLen), 10)
res, err = adapter.ReadString(len(values) + 1)
assert.Nil(t, err)
assert.Equal(t, len(values), len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, values[i], res[i])
}
})
t.Run("test read ascii characters with utf32", func(t *testing.T) {
filePath := TempFilesPath + "varchar1.npy"
data := []string{"a ", "bbb", " c", "dd", "eeee", "fff"}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadString(len(data) - 1)
assert.Nil(t, err)
assert.Equal(t, len(data)-1, len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
res, err = adapter.ReadString(len(data))
assert.Nil(t, err)
assert.Equal(t, 1, len(res))
assert.Equal(t, data[len(data)-1], res[0])
res, err = adapter.ReadString(len(data))
assert.NotNil(t, err)
assert.Nil(t, res)
})
t.Run("test read non-ascii characters with utf32", func(t *testing.T) {
filePath := TempFilesPath + "varchar2.npy"
data := []string{"で と ど ", " 马克bbb", "$(한)삼각*"}
err := CreateNumpyFile(filePath, data)
assert.Nil(t, err)
file, err := os.Open(filePath)
assert.Nil(t, err)
defer file.Close()
adapter, err := NewNumpyAdapter(file)
assert.Nil(t, err)
res, err := adapter.ReadString(len(data))
assert.Nil(t, err)
assert.Equal(t, len(data), len(res))
for i := 0; i < len(res); i++ {
assert.Equal(t, data[i], res[i])
}
})
}
func Test_DecodeUtf32(t *testing.T) {
// wrong input
res, err := decodeUtf32([]byte{1, 2}, binary.LittleEndian)
assert.NotNil(t, err)
assert.Empty(t, res)
// this string contains ascii characters and unicode characters
str := "ad◤三百🎵ゐ↙"
// utf32 littleEndian of str
src := []byte{97, 0, 0, 0, 100, 0, 0, 0, 228, 37, 0, 0, 9, 78, 0, 0, 126, 118, 0, 0, 181, 243, 1, 0, 144, 48, 0, 0, 153, 33, 0, 0}
res, err = decodeUtf32(src, binary.LittleEndian)
assert.Nil(t, err)
assert.Equal(t, str, res)
// utf32 bigEndian of str
src = []byte{0, 0, 0, 97, 0, 0, 0, 100, 0, 0, 37, 228, 0, 0, 78, 9, 0, 0, 118, 126, 0, 1, 243, 181, 0, 0, 48, 144, 0, 0, 33, 153}
res, err = decodeUtf32(src, binary.BigEndian)
assert.Nil(t, err)
assert.Equal(t, str, res)
}